Publications

Pubmed, Google Scholar

2017

Brophy JAN, LaRue T, Dinneny JR (2017) Understanding and engineering plant form. Seminars in Cell and Developmental Biology S1084-9521(17)30382-8. doi: 10.1016/j.semcdb.2017.08.051.

Feldman MJ, Paul RE, Banan D, Barrett JF, Sebastian J, Yee M-C, Jiang H , Lipka AE , Brutnell TP , Dinneny JR , Leakey ADB , Baxter I (2017) Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria. PLoS Genet 13(6): e1006841.

Dietrich D, Pang L, Kobayashi A, Fozard JA, Boudolf V, Bhosale R, Antoni R, Nguyen T, Hiratsuka S, Fujii N, Miyazawa Y, Bae TW, Wells DM, Owen MR, Band LR, Dyson RJ, Jensen OE, King JR, Tracy SR, Sturrock CJ, Mooney SJ, Roberts JA, Bhalerao RP, Dinneny JR, Rodriguez PL, Nagatani A, Hosokawa Y, Baskin TI, Pridmore TP, De Veylder L, Takahashi H, Bennett MJ (2017) Root hydrotropism is controlled via a cortex-specific growth mechanism. Nat Plants. 2017 May 8;3:17057. doi: 10.1038/nplants.2017.57.

Robbins II, N. E. and Dinneny, JR (2017) Growth is required for perception of water availability to pattern plant root branches. BioRxiv doi.org/10.1101/097758

2016

Robbins II, N. E. and Dinneny, J. (2016). A Method to Analyze Local and Systemic Effects of Environmental Stimuli on Root Development in Plants. Bio-protocol 6(17): e1923. http://www.bio-protocol.org/e1923

Feng W, Lindner H, Robbins II N, Dinneny JR (2016) Growing Out of Stress: The Role of Cell- and Organ-scale Growth Control in Plant Water-stress Responses. The Plant Cell vol. 28 no. 8 1769-1782

Sebastian J, Yee MC, Viana WG, Rellán-Álvarez R, Feldman M, Priest H, Trontin C, Lee T, Jiang H, Baxter I, Mockler TC, Hochholdinger F, Brutnell TP and Dinneny JR (2016) Grasses suppress shoot-borne roots to conserve water during drought. Proc. Natl. Acad. Sci. U. S. A. doi: 10.1073/pnas.1604021113**

**Highlight in BBC News and F1000

Rellán-Álvarez R, Lobet G, Dinneny JR (2016) Environmental control of root system biology. Annu. Rev. Plant Biol. 2016. 67:20.1–20.24

Fahlgren N, Bart R, Herrera-Estrella L, Rellán-Álvarez R, Chitwood DH, Dinneny JR (2016) Plant scientists: GM technology is safe. Science 19 Feb 2016:Vol. 351, Issue 6275, pp. 824 DOI: 10.1126/science.351.6275.824-a

2015

Rellán-Álvarez R, Lobet G, Lindner H, Pradier P-L, Sebastian J, Yee MC, Geng Y, Trontin C, LaRue T, Schrager A, Haney C, Nieu R, Maloof J, Vogel JP, Dinneny JR (2015) GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems. eLife 2015;10.7554/eLife.07597**

**Highlight in Nature MethodseLife digest and SF Gate

Dinneny JR. A developmental biologist’s journey to rediscover the Zen of plant physiology. F1000Research 2015:4(F1000 Faculty Rev):264 (doi: 10.12688/f1000research.6167.1)

Robbins NE 2nd, Dinneny JR. The divining root: moisture-driven responses of roots at the micro- and macro-scale. J Exp Bot. 2015 Jan 22. pii: eru496. [Epub ahead of print] Review. PubMed PMID: 25617469.

Duan L, Sebastian J, Dinneny JR. Salt-stress regulation of root system growth and architecture in Arabidopsis seedlings. Methods Mol Biol. 2015;1242:105-22. doi: 10.1007/978-1-4939-1902-4_10. PubMed PMID: 25408448.

Velasquez SM, Dinneny JR, Estevez JM. Live imaging of root hairs. Methods Mol Biol. 2015;1242:59-66. doi: 10.1007/978-1-4939-1902-4_5. PubMed PMID: 25408443.

2014

Bao Y, Aggarwal P, Robbins II NE, Sturrock CJ, Thompson, MC, Tan HQ, Tham C, Rodriguez PL, Vernoux T, Mooney SJ, Bennett MJ, Dinneny JR (2014) Plant roots employ a patterning mechanism to position lateral root branches towards available water. Proc. Natl. Acad. Sci. Jun 24;111(25):9319-24.**

**Recommended F1000 Prime

Sebastian J, Wong MK, Tang E, Dinneny JR. (2014) Methods to Promote Germination of Dormant Setaria viridis seeds. PLoS One 18;9(4):e95109.

Wang PL, Bao Y, Yee MC, Barrett SP, Hogan GJ, Olsen MN, Dinneny JR, Brown PO, Salzman J. (2014) Circular RNA is expressed across the eukaryotic tree of life. PLoS One. 7;9(3):e90859

Dinneny JR. Traversing organizational scales in plant salt-stress responses. Curr Opin Plant Biol. 2014 Nov 15;23C:70-75. doi: 10.1016/j.pbi.2014.10.009. [Epub ahead of print] Review. PubMed PMID: 25449729.

Robbins NE 2nd, Trontin C, Duan L, Dinneny JR. Beyond the barrier: communication in the root through the endodermis. Plant Physiol. 2014Oct;166(2):551-9. doi: 10.1104/pp.114.244871. Epub 2014 Aug 14. PubMed PMID:25125504

Dinneny JR (2014) A gateway with a guard: how the endodermis regulates growth through hormone signaling. Plant Sci. 214, 14-19

2013

Emami, S, Yee MC, Dinneny JR (2013) A robust family of Golden Gate Agrobacterium vectors for plant synthetic biology. Front. Plant Sci. 2;4:339

Geng Y, Wu R, Wee CW, Xie F, Wei X, Chan PMY, Tham C, Duan L, Dinneny JR (2013) A Spatio-Temporal Understanding of Growth Regulation during the Salt Stress Response in Arabidopsis. Plant Cell Jun;25(6):2132-54**

**(‘Spotlight’ in Trends in Plant Science, 10.1016/j.tplants.2013.08.009)

Duan L, Dietrich D, Ng CH, Chan PMY, Bhalerao R, Bennett MJ, Dinneny JR (2013) Endodermal ABA signaling promotes lateral root quiescence during salt stress in Arabidopsis seedlings. Plant Cell Jan;25(1):324-41**

**(‘Spotlight’ in Trends in Plant Science, 10.1016/j.tplants.2013.08.009)

Dinneny JR (2013) Cell-type resolution analysis of root development and environmental responses. Roots and their soil interactions: What we can learn from genomics Chapter 4: 63-78 Wiley Publishing

2012-2009

Wee CW and Dinneny JR (2010) Tools for high-spatial and temporal-resolution analysis of environmental responses in plants. Biotechnol. Lett. 32(10), 1361-1371

Orlando DA, Brady SM, Koch JD, Dinneny JR, Benfey PN (2009) Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. Methods in Molecular Biology 553:57-77

Dinneny JR (2010) Analysis of the salt-stress response at cell-type resolution. Plant Cell & Environment 1;33(4):543-51

2009-2007

Dinneny JR, Benfey PN (2009) Studying root development using a genomic approach. Annual Plant Reviews, Volume 37, Root Development Chapter 12: 325-351 Blackwell Publishing

Dinneny JR, Long TA, Wang JY, Mace D, Pointer S, Barron C, Brady SM, Schiefelbein, JS, Benfey PN (2008) Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science May 16;320(5878):942-5**

**(‘Perspectives’ in Science 16;320:880-1, ‘Research Highlights’ in Nature Genetics 9, 414)

Filiault D, Wessinger C, Dinneny JR, Lutes J, Borevitz J, Weigel D, Chory J, and Maloof JN (2008) Amino acid polymorphisms in Arabidopsis Phytochrome B causes differential response to light. Proc. Natl. Acad. Sci. Feb 26;105(8):3157-62

Dinneny JR and Benfey PN (2008) Plant stem cell niches: standing the test of time. Cell Feb 22;132(4):553-7

Brady SM, Orlando D, Lee JY, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U, Benfey PN (2007) A high-resolution root spatiotemporal map reveals dominant expression patterns. Science Nov 2;318(5851):801-6

2006-1999

Dinneny JR, Weigel D, Yanofsky MF (2006) NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis. Development 133, 1645-1655 (Cover issue)

Dinneny JR, Weigel D, Yanofsky MF (2005) A genetic framework for fruit patterning in Arabidopsis. Development 132, 4687-4696 (Cover issue)

Dinneny JR and Benfey PN, (2005) Stem cell research goes underground: the RETINOBLASTOMA-RELATED gene in root development. Cell 123, 1180-1182

Dinneny JR and Yanofsky MF (2005) Drawing lines and borders: how the dehiscent fruit of Arabidopsis is patterned. Bioessays 27, 42-49

Dinneny JR, Yadegari R, Fischer RL, Yanofsky MF, Weigel D (2004) The role of JAGGED in shaping lateral organs. Development 131, 1101-1110**

**(‘Previews’ in Developmental Cell 6(3), 318-319)

Dinneny JR and Yanofsky MF (2004) Floral Development: An ABC Gene Chips in Downstream. Curr. Biol. 14, R840-R841

Dinneny JR and Yanofsky MF (2004) Vascular Patterning: Xylem or Phloem? Curr. Biol. 14, R112-R114

Wu X, Dinneny JR, Crawford KM, Rhee Y, Citovsky V, Zambryski PC, Weigel D (2003) Modes of intercellular transcription factor movement in the Arabidopsis apex. Development 130, 3735-3745.

Kiyosue T, Ohad N, Yadegari R, Hannon M, Dinneny J, Wells D, Katz A, Margossian L, Harada J, Goldberg R, Fischer RL (1999) Control of fertilization-independent-endosperm development by the MEDEA polycomb gene in Arabidopsis. Proc. Natl. Acad. Sci. 96, 4186-4191.

 

 

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